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fect is due to methylation of CpGs at stalledreplication forks, which would typically not be methylated. Nevertheless, the doses needed in these experiments werein the microto millimolar Afatinib range, and thus 1000x higher than thedoses used in our experiments. For that reason the physiologicalorclinical relevance of this ‘‘cytotoxic hypermethylation’’ effect isunclear. Unlike ‘‘cytotoxic hypermethylation’’, gemcitabine didnot impact international DNA methylation and did not markedly inhibitcell proliferation at the doses used in our experiments.Our results rather support a model where gemcitabine functionsby inhibiting NER and thereby DNA demethylation, thus leadingto gene silencing. We therefore propose that gemcitabine besidesits various known effects also acts as an epigenetic drug on DNAmethylation, which has consequences for the understanding ofits effect in cancer therapy.
By way of example, MLH1 is a tumorsuppressor and the fact that its expression is silenced bygemcitabine could be an undesirable effect in cancer treatment.A lot more generally, gemcitabine could be a beneficial tool to specificallyinterfere with Gadd45 mediated DNA demethylation in biologicalprocesses ranging from embryonic gene activation to adultneurogenesis.Materials and MethodsTissue culture Afatinib and transfectionHEK293, HEK293T, MCF7 and RKO cellsweregrown at 37uC in 10CO2inDulbecco’s Modified Eagle’s Medium, 10fetal calfserum, 2 mM LGlutamine, 100 Uml penicillin and 100 mgmlstreptomycin. HCT116 cellswerecultured at 37uC below 10CO2 in McCoy’s 5A mediumsupplemented as described above. Transient DNA transfectionswere carried out employing FuGENE6following themanufacturer instructions.
For MLH1 and C1S2 methylationanalysis, Everolimus cells had been treated with 34, 67 or 134 nM gemcitabineor 43 nM etoposidefor 18 h or with500 nM 5aza29deoxycytidinefor 42 h beforeharvesting. For methylationsensitive Southern blotting andbisulfite sequencing, cells had been transfected on 10 cm dishes with1.2 mg pBlKS manage plasmid or Gadd45a along with pOctTKEGFP.3 h following transfection, cells had been treated with 134 nMgemcitabine for 65 h. For methylationsensitive PCR of pOctTKEGFPat HpaII internet site 2299, cells had been transfected in 6well disheswith 100 ng pBlKS manage plasmid or hGadd45a along with200 ng pOctTKEGFP employing Turbofect transfection reagentfollowing the manufacturer instructions.
Immediatelyafter transfection, cells had been treated with 50, 100 or 150 nMgemcitabine, 15, 25 or HSP 50 nM camptothecin,50, 100 or 200 mM CRT 0044876, 1, 5 or 10 mMbetulinic acid, 5, 10 or 20 mM ABT888or 10, 20 or 40 nM etoposidefor 48 h.Luciferase reporter assayDualLuciferase reporter assayswere performed 40 hafter transient DNA transfection of HEK293T cells in 96wellplates with a total of 110 ng DNA per effectively, containing 5 ng fireflyluciferase reporter, 5 ng pBS or 5 ng Xenopus tropicalis Gadd45aplasmid, 0.1 ng Renilla luciferase reporter plasmid and 100 ngpBS. Reporter plasmids had been produced in the dam2dcm2 bacteriastrain SCS110 and in vitro methylated employing the HpaIIand HhaImethylase.Transfections had been performed in triplicate. Whereindicated, cells had been treated with 67 nM gemcitabine, 26 nMcamptothecin, 43 nM etoposide,30 nM blapachoneor 20 nM merbaronefor 18 h.
Results are shown as the mean of triplicatesand error bars indicate common deviation. Experiments wererepeated three times.Quantitative RTPCRRNA was isolated employing the RNeasy Kitand reversetranscribed Everolimus with all the SuperScript II reverse transcriptase.RealTime PCR was performed employing Roche LightCycler480probes master and primers in combination with predesignedmonocolor hydrolysis probes with the Roche Universal probelibrary. The following primers and UPL probes weredesigned at https:www.rocheappliedscience.comsisrtpcrupladc.jsp. hMLH1 forward 59GAATGCGCTATGTTCTATTCCA,reverse 59ATGGAGCCAGGCACTTCA, UPLprobe38. For quantification Roche LC480 relative quantificationsoftware module was used. All values had been normalized to thelevel with the housekeeping gene GAPDH.
Analysis of DNA methylationGenomic DNAfrom treated cells or transfectedreporter plasmids had been prepared employing the BloodTissue kit. The DNA was split into three parts and either digestedwith PvuII, HpaII or its methylation insensitive isoschizomerMspI. Methylation was determined by comparing HpaII digestedversus Afatinib PvuII manage digested DNA samples through qPCR usingmethylation sensitive PCR primers. As internal normalization manage, a PCRusing methylation insensitive primerswas performed. MspIdigest served as manage for an intact restriction enzymerecognition internet site. To manage for total HpaII digest, amplificationof the promoter with the unmethylated GAPDH housekeepinggene containing two HpaII sitesor theunmethylated reporter plasmid was performed.COBRA was performed as described. Genomic DNAmethylation levels had been determined by capillary electrophoreticanalysis, as described.Methylationsensitive Southern blotting was performed Everolimus asdescribed previously. For bisulfite sequencing, the transfectedpOctTKEGFP reporter plasmid was recovered from t